Source code for dowhy.graph_learners.ges

import numpy as np
import networkx as nx
from importlib import import_module

from dowhy.graph_learners import GraphLearner
from dowhy.utils.graph_operations import *

class GES(GraphLearner):
	'''
	Causal Discovery using GES method.
	Link: https://pypi.org/project/ges/
	'''
	def __init__(self, data, full_method_name, *args, **kwargs):
		super().__init__(data, full_method_name, *args, **kwargs)
		
		library_class = import_module(full_method_name)
		self._method = library_class

	def learn_graph(self, labels=None):
		'''
		Discover causal graph and return the graph in DOT format.

		'''
		self._adjacency_matrix, self.score = self._method.fit_bic(self._data.to_numpy())
		self._adjacency_matrix = np.asarray(self._adjacency_matrix)

		# If labels provided
		if labels is not None:
			self._labels = labels

		self._graph_dot = adjacency_matrix_to_graph(self._adjacency_matrix, self._labels)
		
		# Return in valid DOT format
		self._graph_dot = str_to_dot(self._graph_dot.source)
		return self._graph_dot